PhD Thesis

% Stanford University PhD thesis style -- modifications to the report style
% This is unofficial so you should always double check against the
% Registrar's office rules
% See http://library.stanford.edu/research/bibliography-management/latex-and-bibtex
% 
% Example of use below
% See the suthesis-2e.sty file for documentation
%
\documentclass{report}
\usepackage{suthesis-2e}

% external packages
\usepackage{graphicx}         % for figures
\usepackage[utf8x]{inputenc}  % for dealing with unicode in bib file apparently
\usepackage[numbers]{natbib}  % for citenum
\usepackage{bm}               % bold greek symbols
\usepackage{amsmath}          % math stuff
\usepackage{hyperref}         % url

\dept{Applied Physics}

\begin{document}

\title{Adjoint-Based Optimization and Inverse Design of Photonic Devices}

\author{Tyler William Hughes}

\principaladviser{Shanhui Fan}
\firstreader{Robert L. Byer}
\secondreader{Olav Solgaard}
% \thirdreader{Mark Brongersma} %if needed
% \fourthreader{Amir Safavi-Naeini} %if needed
 
\beforepreface
\prefacesection{Abstract}
\input{preface/abstract.tex}
\prefacesection{Acknowledgments}
\input{preface/acknowledgements.tex}
\afterpreface

\input{commands.tex}

% ================ MAIN TEXT ================== %

\chapter{Introduction}
\input{chapters/1_Introduction.tex}

\chapter{Optimization of Laser-Driven Particle Accelerators}
\input{chapters/2_ACHIP_adjoint.tex}

\chapter{Integrated Photonic Circuit for Accelerators on a Chip}
\input{chapters/3_ACHIP_PIC.tex}

\chapter{Training of Optical Neural Networks}
\input{chapters/4_ONN.tex}

\chapter{Wave-Based Analog Recurrent Neural Networks}
\input{chapters/5_Wave_RNN}

\chapter{Extension of Adjoint Method to Nonlinear Systems}
\input{chapters/6_Adjoint_Nonlinear.tex}

\chapter{Conclusion and Final Remarks}
\input{chapters/7_Conclusion.tex}

% ================ APPENDIX =================== %

\appendix

\chapter{Simulation of Photonic Neural Networks}
\input{appendix/1_ANN_Simulation.tex}

\chapter{Backpropagation for Nonholomorphic Activations}
\input{appendix/2_Nonholomorphic_backprop.tex}

% ============== BIBLIOGRAPHY ================= %,

\bibliographystyle{plain}
\bibliography{bib/bib_main,bib/bib_DLA,bib/bib_tree,bib/bib_MZI,bib/bib_insitu,bib/bib_angler}

\end{document}