ThesisTemplate

%---------------------------------------------------
% PhD thesis template by Fabrizio Miano, 
% Last edit March 2018. 
%---------------------------------------------------
\documentclass[a4paper,11pt,oneside]{memoir} % 
\setcounter{tocdepth}{3} % Depth of sections to include in the table of contents - currently up to subsections 
\setsecnumdepth{subsection}% % Depth of sections to number in the text itself - currently up to subsections
\captionnamefont{\footnotesize} % Size of caption text
\captiontitlefont{\footnotesize} % Size of caption title
\hangcaption % indent caption
\newsubfloat{figure} % Allow subfloats in figure environment
\usepackage[british]{babel}
\usepackage[utf8]{inputenc} 
\usepackage{fourier} % font
\usepackage[T1]{fontenc} 
\usepackage{physics}
\usepackage{enumerate}
\usepackage{epigraph}
\usepackage[printonlyused]{acronym}
\usepackage{placeins}
\usepackage[hang]{footmisc}
\usepackage{tablefootnote}
\usepackage{multicol} % multicolumn text
\usepackage{wrapfig} % figures wrapped in text
\usepackage{booktabs} % lines for tables
\usepackage{lineno} % Line Numbers 
%---------------------------------------------------
% OTHER FORMATTING/LAYOUT DECLARATIONS
%---------------------------------------------------
\usepackage{titlesec, color, xcolor, calc, blindtext}
\usepackage{feynmp}
\usepackage[pdftex]{graphicx}
\usepackage{amsmath}
\usepackage{commath}
\usepackage{amssymb}
\usepackage{multirow}
\usepackage{tikz}
\usepackage{tikz-3dplot}
\usepackage{cancel}
\usetikzlibrary{decorations.markings,calc,shapes,arrows}
%---------------------------------------------------
% LINE SPACING AND FOOTNOTE MARGIN
%---------------------------------------------------
\newcommand{\linespacing}{1.25}
\renewcommand{\baselinestretch}{\linespacing}
\setlength{\footnotemargin}{3mm}
%---------------------------------------------------
% BIBLIOGRAPHY STYLE
%---------------------------------------------------
\bibliographystyle{latex/atlasBibStyleWithTitle}
%---------------------------------------------------
%   DOCUMENT VARIABLES
%   Fill in the lines below to enter your information into the thesis template
%   Each of the commands can be cited anywhere in the thesis
%---------------------------------------------------
\newcommand{\myTitle}{Thesis Title}
\newcommand{\mySubtitle}{Thesis Subtitle\xspace} % if any
\newcommand{\myDegree}{Doctor of Philosophy \xspace}
\newcommand{\myName}{Name \textsc{Surname}\xspace}
\newcommand{\myProf}{Prof. Tal \textsc{Dei Tali}\xspace}
\newcommand{\myOtherProf}{Prof. Barzotti \textsc{Pompeski}\xspace}
\newcommand{\mySupervisor}{Dr. Tarapie \textsc{Tapiota}\xspace}
\newcommand{\myDepartment}{Department of Sbadgioff\xspace}
\newcommand{\myFaculty}{School of Poppete and Bi-poppete\xspace}
\newcommand{\myUni}{University of Sussex\xspace}
\newcommand{\myLocation}{Brighton\xspace}
\newcommand{\myTime}{\today\xspace}
\newcommand{\myVersion}{version 1.0\xspace}
%---------------------------------------------------
% USEFUL COMMANDS
%---------------------------------------------------
\newcommand{\ie}{i.\,e.}
\newcommand{\Ie}{I.\,e.}
\newcommand{\eg}{e.\,g.}
\newcommand{\Eg}{E.\,g.}
%---------------------------------------------------
% MARGINS - CHANGE THESE ACCORDING TO YOUR UNIVERSITY RULES, IF ANY
%---------------------------------------------------
% The left-hand-side should be 40mm.  The top and bottom margins should be
% 25mm deep.  The right hand margin should be 20mm.
\usepackage[a4paper,top=2.5cm,bottom=2.5cm,left=4cm,right=2cm,headsep=10pt]{geometry}

%---------------------------------------------------
% MEMOIR CLASS SETTINGS AND CHAPTER HEADER/STYLE
%---------------------------------------------------
\definecolor{chaptercolor}{gray}{0.35}
% helper macros
\newcommand\numlifter[1]{\raisebox{-3cm}[0pt][0pt]{\smash{#1}}}
\newcommand\numindent{\kern5pt}
\newlength\chaptertitleboxheight
\makechapterstyle{hansen}{
  \renewcommand\printchaptername{\raggedleft}
  \renewcommand\printchapternum{%
    \begingroup%
      \leavevmode%
      \chapnumfont%
      \strut%
      \numlifter{\thechapter\hrulefill}%
      \numindent%
    \endgroup%
  }
  \renewcommand*{\printchapternonum}{%
    \vphantom{
    \begingroup%
      \leavevmode%
      \chapnumfont%
      \numlifter{\vphantom{9}}%
      \numindent%
    \endgroup}
    \afterchapternum
  }
  \setlength\midchapskip{0pt}
  \setlength\beforechapskip{\baselineskip}
  \setlength{\afterchapskip}{4\baselineskip}
  \renewcommand\chapnumfont{%
    \fontsize{5cm}{0cm}%
    \bfseries% or 
    \itshape
    %\sffamily%
    \color{chaptercolor}%
  }
  \renewcommand\chaptitlefont{%
    \normalfont%
    \Huge%
    \bfseries%
    \scshape
    \raggedright%
  }%
  \settototalheight\chaptertitleboxheight{%
    \parbox{\textwidth}{\chaptitlefont \strut bg\\bg\strut}
  }
  \renewcommand\printchaptertitle[1]{
    \raggedright\parbox[t][\chaptertitleboxheight][t]{.7\textwidth}{%
      \chaptitlefont\strut ##1  \strut
    }%
  }
}


% --------------------------------------------------
% Set page style
% --------------------------------------------------
\renewcommand{\sectionmark}[1]{\markright{{\itshape\thesection\ #1}}} % with number of section 
\makepagestyle{custom}% Create custom page style
\makeoddhead{custom}% Adjust odd header for custom page style
{\rightmark}% Left odd header
{}% Center odd header
{\thepage}% Right odd header
\makeheadrule{custom}{\textwidth}{.5pt}% Header rule width/thickness for custom page style
\aliaspagestyle{chapter}{custom} % just to save some space
% change these if you want to put the page number somewhere else
\copypagestyle{chapter}{plain}
\makeoddhead{chapter}{}{}{\thepage}
\makeoddfoot{chapter}{}{}{}

% --------------------------------------------------
% Remove some warnings 
% --------------------------------------------------
\setlength{\headheight}{14pt} % to avoid multiple "\headheight is too small" warnings 
\setlength{\parskip}{5pt} % to have some space between paragraphs
\pdfminorversion=6  % to avoid warnings like "PDF inclusion: found PDF version <1.6>, but at most version <1.5> allowed"  

% --------------------------------------------------
% Uncomment for DIGITAL version
% --------------------------------------------------
\usepackage[pdftex,                          % Settings for PDF Metadata
            pdfauthor={Name Surname},
            pdftitle={\myTitle},
            pdfsubject={PhD Thesis},
            pdfkeywords={Whatever suits most},
            pdfproducer={LaTeX},
            pdfcreator={pdflatex},
            colorlinks, pagebackref, pdfusetitle,            %Default Settings; original sussex template
            urlcolor=blue, citecolor=blue, linkcolor=blue,
            bookmarksnumbered, plainpages=false]{hyperref}
% --------------------------------------------------
% Uncomment for PRINTED version
% --------------------------------------------------
% \usepackage[pdftex,
%             pdfauthor={Name Surname},
%             pdftitle={\myTitle},
%             pdfsubject={PhD Thesis},
%             pdfkeywords={Whatever},
%             pdfproducer={LaTeX},
%             pdfcreator={pdflatex},
%             pdfusetitle, bookmarksnumbered, plainpages=false]{hyperref}
% --------------------------------------------------

\graphicspath{{./figures/}} % directory with all the pictures
\flushbottom
%---------------------------------------------------
% BEGIN DOCUMENT
%---------------------------------------------------
\begin{document}
  %---------------------------------------------------
  % PREAMBLE: roman page numbering i, ii, iii, ...
  %---------------------------------------------------
  \pagestyle{custom}% Set page style to custom
  \chapterstyle{hansen} % Set chapter style
  \begingroup
    \frontmatter
    \pagenumbering{roman}
    \include{FrontBackMatter/Titlepage} 
    \include{FrontBackMatter/Dedication} % Dedication page
    \include{FrontBackMatter/Acknowledgments} % Acknowledgements page
    \include{FrontBackMatter/Declaration} % Declaration
    \include{FrontBackMatter/Abstract} % Abstract page
  \endgroup
  %---------------------------------------------------
  % TABLE OF CONTENTS, LISTS OF TABLES & FIGURES
  %---------------------------------------------------
  \begingroup
    \newpage  
    \setlength{\parskip}{0pt} % To restore distance between Chapters, sections and subsections in the table of contents
    \pdfbookmark[0]{Contents}{contents_bookmark}
    \pagestyle{custom}% Set page style to custom
    \chapterstyle{hansen} % Set chapter style
    \tableofcontents*  % as per in memoir class 
  \endgroup

  %---------------------------------------------------
  % MAIN THESIS TEXT: arabic page numbering 1, 2, 3, ...
  % THESIS CONTENT - CHAPTERS
  %---------------------------------------------------
  \mainmatter
  \pagenumbering{arabic}
  \input{Chapters/chapter1}
  \input{Chapters/chapter2}
  
  %---------------------------------------------------
  % APPENDICES
  %---------------------------------------------------
  \appendix
      \input{Chapters/appA.tex}
  \backmatter
      \input{FrontBackMatter/Acronyms.tex}

  %---------------------------------------------------
  % BIBLIOGRAPHY
  %---------------------------------------------------
  \clearpage
  \phantomsection
  %\addcontentsline{toc}{chapter}{Bibliography} % unnecessary with this new template
  \bibliography{Chapters/bibliography}
  \newpage\input{FrontBackMatter/Colophon}

  %---------------------------------------------------
  % END DOCUMENT
  %---------------------------------------------------
\end{document}